SHAPEプローブ [RNA構造解析]

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引用文献

1. 1) RNA Structure Analysis at Single Nucleotide Resolution by Selective 2'-Hydroxyl Acylation and Primer Extension (SHAPE)
   • E. J. Merino, K. A. Wilkinson, J. L. Coughlan, K. M. Weeks, J. Am. Chem. Soc. 2005, 127, 4223.
2. 2) A Fast-Acting Reagent for Accurate Analysis of RNA Secondary and Tertiary Structure by SHAPE Chemistry
   • S. A. Mortimer, K. M. Weeks, J. Am. Chem. Soc. 2007,129, 4144.
3. 3) Guidelines for SHAPE Reagent Choice and Detection Strategy for RNA Structure Probing Studies
   • S. Busan, C. A. Weidmann, A. Sengupta, K. M. Weeks, Biochemistry 2019, 58, 2655.
4. 4) Comparison of SHAPE reagents for mapping RNA structures inside living cells
   • B. Lee, R. A. Flynn, A. Kadina, J. K. Guo, E. T. Kool, H. Y. Chang, RNA 2017, 23, 169.
5. 5) Fingerprinting Noncanonical and Tertiary RNA Structures by Differential SHAPE Reactivity
   • K. A. Steen, G. M. Rice, K. M. Weeks, J. Am. Chem. Soc. 2012, 134, 13160.
6. 6) RNA SHAPE analysis in living cells
   • R. C. Spitale, P. Crisalli, R. A. Flynn, E. A. Torre, E. T. Kool, H. Y. Chang, Nat. Chem. Biol. 2013, 9, 18.
7. 7) Comparative Analysis Reveals Furoyl in Vivo Selective Hydroxyl Acylation Analyzed by Primer Extension Reagents Form Stable Ribosyl Ester Adducts
   • D .Chan, C. Feng, Y. Zhen Y, R. A. Flynn, R. C. Spitale, Biochemistry 2017, 56, 1811.
8. 8) Structural imprints in vivo decode RNA regulatory mechanisms
   • R. C. Spitale, R. A. Flynn, Q. C. Zhang, P. Crisalli, B. Lee, J. W. Jung, H. Y. Kuchelmeister, P. J. Batista, E. A. Torre, E. T. Kool, H. Y. Chang, Nature 2015, 519, 7486.
9. 9) SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data
   • L. D. Poulsen, L, J. Kielpinski, S. R. Salama, A. Krogh, J. Vinther, RNA 2015, 21, 1042.
10. 10) A novel SHAPE reagent enables the analysis of RNA structure in living cells with unprecedented accuracy
    • T. Marinus, A. B. Fessler, C. A. Ogle, D. Incarnato, Nucleic Acids Res. 2021, 49, e34.
11. 11) Time-Resolved RNA SHAPE Chemistry
    • S. A. Mortimer, K. M. Weeks, J. Am. Chem. Soc. 2008, 130, 16178.
12. 12) In Vitro Methods to Decipher the Structure of Viral RNA Genomes
    • C. Romero-López, S. E. Ramos-Lorente, A. Berzal-Herranz, Pharmaceuticals 2021, 14, 1192.

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